GST returns management is one of the most important yet time-consuming activities of businesses in India. Keeping up with the raft of requirements of maintaining compliance with all the GST-related matters, be it the issuing of GST-compliant invoices or ensuring that you have your returns correctly filed in the right time, can at times be a daunting experience altogether. That is where the involvement of modern GST billing software comes in. Not only do these tools automate the invoice, but they also reconcile, report, and withhold tax filings as well as tax penalties, saving businesses time and greatly minimizing errors.
In our guide, you will learn about the most prominent GST return filing and billing software in India of 2025, their advantages, features, and costs. Our solutions will support your GST process, no matter what type of organization you are or where in the world your business is located.
What’s the Benefit of GST Billing and Return Filing Software?
And now, a few insights as to why GST software is so vital in the modern days of business:
- Saves Time – There is less manual labour involved via automation
- Error-Free Tax Filing – Mistakes are reduced by proper determination of the tax.
- Facile Invoicing- Instantly create GST-compliant invoices.
- Regulatory Compliance – Be in tune with the new GST laws and deadlines.
- Business Insights-Monitor your cash flow, costs, and profits.
List of Best GST Return Filing & Billing Software
1. ClearTax GST
ClearTax is one of the most reliable tax filing and billing systems in the Indian industry, and is aimed at streamlining compliance of small, large, and medium enterprises. It facilitates fast transfer of the invoices, simple reconciliation with GSTN, and easy filing. Through its usable interface, even non-accountants can input GST returns without having to bark up the wrong tree.
ClearTax is also compatible with bulk data loading, which makes it adequate throughout for companies with large transactional data. It has grown to be the most usable platform by startups, SMEs, as well as tax professionals across India over the years.
Features:
- Automatic GST return filing (GSTR-1 to GSTR-9)
- Smart invoice generation
- Purchase reconciliation
- Bulk upload of invoices
- Extensive dashboard and analytics tools
- Error validation for returns
- Integrated e-way bill and e-invoice
Best For: CAs, tax professionals, and businesses seeking simplified GST compliance and automation.
Pricing: Starts at ₹5,000/year for SMEs; expert pack pricing varies by number of GSTINs.
2. Zoho Books
Zoho Books is a complete GST-compliant bookkeeping software that enables Indian enterprises to simplify invoicing, tax VAT filing, and financial management as a whole. A simple yet powerful interface is what Zoho Books is all about the integration of banks, payment gateways, and other Zoho apps.
It maintains automated GST reports, and thus, the filing of returns becomes precise and stress-free. The businesses can also monitor costs, maintain cash movements, and gain real-time intelligence. Zoho Books is particularly well-known in India, where it is priced and conveniently affordable to startups and smaller enterprises.
Features:
- GST-ready invoicing and accounting
- Automated return preparation & filing
- Project management software
- Inventory & expense tracking
- Bank reconciliation
- Multi-user support, customizable workflows, and advanced reporting
Best For: Small businesses, startups, larger enterprises, service firms.
Pricing: Free to $240/month, depending on plan and users.
3. TallyPrime
TallyPrime is a well-known name in Indian accounting with powerful GST billing and GST return filing functionality that businesses have used for years. It also offers a complete accounting product, including billing, through to compliance, all in one place. The reports that are GST-ready and have an easy flow with GSTN make filing faster and error-free.
TallyPrime is equally relied upon because of the inventory management and payroll functions it has to offer, thereby serving as a one-stop solution to business entities. It has a long-established reputation and is frequently updated, so businesses will stay in line with the changing tax laws.
Features:
- Complete GST invoicing and filing suite
- E-way bill generation
- Powerful accounting, inventory, and payroll capabilities
- Secure multi-company support
- Banking features and dashboards
- Scalable for small to large organizations
Best For: SMEs to large enterprises need robust offline and multi-user support.
Price: ₹22,500 (single-user) and ₹67,500 (multi-user) plus GST annually.
4. Vyapar
Vyapar is a user-friendly GST billing and filing software designed to cater to the needs of Indian shopkeepers, retailers, and wholesalers. It is all based on simplicity, such that the non-technical users can create GST invoices in a few seconds. Having offline and mobile features, Vyapar can be used anywhere, and this feature makes it ideal to be used in smaller towns.
The app also extends to GSTR reports and expense monitoring that can ensure business owners are compliant. It is affordable with a mobile-first design, which has made it the favorite of small traders across India.
Features:
- GST billing and return filing
- Inventory management
- Payment reminders and expense tracking
- Bank reconciliation
- Barcode and e-way bill generation
- Customizable templates
- Multi-user support, offline and mobile access
Best For: Small businesses, traders, retailers.
Price: $40 to $111 per year, depending on plan.
5. Busy Accounting Software
Busy Accounting Software is an established GST billing and accounting software package used by small and medium-sized businesses and accounting practitioners throughout India. It has provided a fully equipped package of functionalities such as GST invoice, filing returns, reconciliation, and financial management.
Busy is superior in terms of its powerful reporting facilities that allow businesses to easily keep their regulations at arm’s length. It is easy to use, even for both accountants and business owners. Busy has long been a trusted name in India to consider GST compliance software.
Features:
- Multi-company accounting
- Voucher management
- GST invoicing
- Multi-level grouping
- Customizable reports
- Inventory management
- Bank reconciliation
- Extensive reporting and multi-user support
Best For: SMEs, traders, distributors, and multi-location businesses.
Price: ₹9,000 to ₹45,000 per year, depending on license.
6. Marg ERP 9+
Marg ERP 9+ is a complete billing, accounting, and GST filing software widely used in India by distributor and wholesaler companies. Known for its flexibility and customization options, it also works as an effective supply chain management software, helping businesses streamline stock movement and logistics.
Marg ERP automates GST returns, supports e-way bills, and manages inventory with ease. It is especially beneficial for businesses handling large volumes of goods. With a strong user base across India, Marg ERP remains a reliable solution for GST compliance, accounting, and end-to-end supply chain management.
Features:
- GST billing and filing
- Inventory and payroll management
- Purchase and sales order management
- Live credit limit and claim tracking
- Barcode and e-way bill integration
- Advanced reporting
- Mobile field force support
Best For: Retailers, pharma, FMCG, SMEs with complex supply chains.
Price: $175 to $350 per year, depending on edition.
7. myBillBook
MyBillBook is a sleek billing and GST returns application to help small Indian firms. who have just insurance of availability without sacrificing compliance. It supports a user to generate GST-compliant invoices, follow checks, and create review-ready reports. The software can be used on both a desktop and mobile platform and hence, is mobile.
Its professional, cosmetic, and handy tools make it one of the best accounting packages to be used by an owner who has a low level of accounting knowledge. MyBillBook has established itself over the years as a popular service by SMEs due to its low cost and user-friendly interface.
Features:
- GST and non-GST billing and invoicing
- Inventory management
- Bulk downloads
- Godown management
- Staff attendance tracking
- E-way bills generation
- POS billing and loyalty programs
- Mobile app and WhatsApp/SMS marketing
- Online store support
Best For: Local businesses, retailers, and small firms.
Price: ₹399 to ₹2,599 per year.
8. HostBooks GST
HostBill GST is an online GST billing and GST return filing software that enables businesses and tax professionals to deliver compliance hassle-free. It automates the GST prevention of much of the process, including invoicing, reconciliation, and filing, among others. Host also interconnects with Tally, and this makes it convenient for businesses that are already using accounting tools.
Its cloud solution provides a secure platform that enables multiple users to work at the same time, thereby enhancing productivity. HostBooks has been able to be the trusted partner of accounts and SMEs in the Indian market due to its goodwill as well as reputation.
Features:
- Automated GST return filing
- Invoice and vendor management
- E-way bill generation
- GSTR reconciliation
- ITC management
- Multi-user and mobile/web access
- Bank-level security
Best For: Tax professionals, SMEs, compliance-focused businesses.
Price: Around ₹4,600 per year.
Also Read: AI Project Management Tools
9. GenieBooks
The GST billing and accounting platform, called GenieBooks, helps businesses to make compliance and business management in India easy. It has features that automate GST filing, invoices, and tax computation, and help businesses to stay free of time and energy. The granular financial data provided by GenieBooks is also a valuable source of information to decision-makers, which allows them to better understand business health.
It supports e-invoicing and its interface is simple to understand and use, which makes it address the requirements of modern business. It is based on the cloud and can therefore be accessed anywhere, hence very affordable to SMEs in India.
Features:
- GST return filing
- Multi-company support
- Accounting, expense, inventory, and payroll management
- Banking integration
- API integration
- Cloud and mobile access
- Customizable dashboards
Best For: Startups, freelancers, SMEs.
Price: $97 per year (single company) to $972 per year (multi-company).
10. ExpressGST (SAG Infotech)
ExpressGST, developed by SAG Infotech, is a trusted and user-friendly GST filing and billing software designed to make tax compliance hassle-free for Indian businesses and professionals. It simplifies complex GST processes, helping users file returns accurately and on time without worrying about frequent regulatory changes.
Whether you’re a small business owner or a tax consultant handling multiple clients, ExpressGST supports your needs with practical features and reliable support. Its intuitive design ensures even those new to GST can navigate filing and billing with confidence and ease
Features:
- Unlimited GST return filing (GSTR-1, 3B, etc.)
- Real-time error checks and mismatch alerts
- E-invoice & e-way bill generation
- Automatic updates with the latest GST rules
- Invoice Management System dashboard
- Secure digital signature & IRN recognition
Best For: CAs, tax consultants, and small and medium businesses need easy GST filing and billing.
Price: Basic Desktop Software at ₹5,000; GST Combo (Desktop with e-invoice & e-way bill) at ₹10,000; Online All-in-One GST with CA Website at ₹18,000 per year.
Quick Comparison
| Software | Features | Best For | Pricing (Approx.) | Pros | Cons |
| ClearTax GST | Automated GST filing (GSTR1-9), smart invoice, purchase reconciliation, bulk upload, dashboards, e-way/e-invoice | CAs, SMEs, businesses | ₹5,000+/yr | Comprehensive GST compliance, expert pack for CAs | It can be costly for small users |
| Zoho Books | GST invoicing, automated filing, project mgmt, inventory & expense tracking, reconciliation, multi-user | Startups, SMEs, enterprises | Free – $240/mo | Easy to use, scalable plans, strong accounting features | Price increases with features and users |
| TallyPrime | GST invoicing, e-way bill, accounting, payroll, inventory, multi-company support | SMEs, large companies | ₹22,500 (single) / ₹67,500 (multi-user)+GST | Robust, widely used by Indian businesses | Primarily desktop-based, higher upfront cost |
| Vyapar | GST billing & filing, inventory mgmt, payment reminders, expense tracking, barcode & e-way bills, offline | Small businesses, retailers, and traders | $40 – $111/yr | User-friendly, mobile & offline use | Limited advanced features compared to enterprise software |
| Busy Accounting | Multi-company accounting, voucher & GST invoicing, grouping, reports, inventory & bank reconciliation | SMEs, distributors, multi-location businesses | ₹9,000 – ₹45,000/yr | Feature-rich, supports complex business needs | The interface may feel outdated |
| Marg ERP 9+ | GST billing & filing, payroll, orders, credit & claim tracking, barcode, reports, mobile field support | Retail, pharma, FMCG, supply chain SMEs | $175 – $350/yr | Strong for supply chain & pharma, mobile support | It can be complex for beginners |
| myBillBook | GST/non-GST billing, POS, inventory, bulk download, attendance, e-way, loyalty programs, mobile app | Local businesses, retailers | ₹399 – ₹2,599/yr | Affordable, easy for small firms | Limited scalability |
| HostBooks GST | Automated GST filing, invoice & vendor mgmt, e-way bill, reconciliation, ITC mgmt, multi-user, mobile | Professionals, SMEs | ₹4,600/yr | Affordable, good for GST professionals | Less lesser-known brand, fewer advanced features |
| GenieBooks | GST filing, multi-company, accounting, payroll & banking integration, API, mobile & cloud, dashboards | Startups, freelancers, SMEs | $97 – $972/yr | Cloud-based, multi-company, API integration | Pricey for multiple companies |
| SlickAccount | GST invoicing & filing, POS, barcoding, inventory, bank reconciliation, multi-user, cloud, reminders | Small businesses, startups | $51.40/yr | Simple interface, cloud-based | Limited advanced reporting features |
What to Look for in GST Software?
These are some of the features that must be included in the right GST return filing and billing software:
- GST- compliant invoicing/ electronic invoicing support
- e-Invoicing full GSTN integration with GSTR-3B and GSTR-1 returns
- E-way bills marketing
- Auto reconciliation of purchase/sales data
- Multi-user and Cloud accessibility
- Low cost and simplicity
The Advantages of Using GST Return Filing Software
- Compliance Made Easy: There is no need to worry about missed deadlines or errors.
- Easy-Breezy Data Management: Synchronizes billing cost, expenses, and tax reports to one central location.
- Enhanced Efficiency: Staff now reduces the time consumed to do paperwork and focuses on business development.
- Professional Image: GST-ready invoices will build the confidence of customers and suppliers.
- Scalability- Applies to both small businesses and large ones.
Conclusion
GST compliance does not need to be hard. Investing in the appropriate GST return filing and billing software in India can be time-saving, minimise errors, and allow business owners to stop worrying about tax matters and concentrate on growing their business. Irrespective of the size of your business, whether you are a small shop owner who needs basic billing options such as Vyapar and myBillBook, or a large organization that requires more advanced options such as TallyPrime and ClearTax, you will find a solution that fits your business to suit your needs.
Selecting the software to suit your needs should give peace of mind for tax compliance in the future or business growth on a sustainable basis.
FAQs
1. What is the best GST return filing software in India for small businesses?
Vyapar, myBillBook, and Zoho Books are the best alternatives to small and medium-sized businesses as they are less expensive and user-friendly.
2. What is the GST portal 2025 update?
Starting April 2025, multi-factor authentication (MFA) is required, and starting June 2025, invoice numbers are not case-sensitive on the portal.
3. Which is the most popular billing software?
TallyPrime takes the lead in running in India, whereas Vyapar and myBillBook prove to be the most popular among smaller companies.
4. What is a free GST software in India?
Vyapar has a free plan; Zoho Books has a free plan for businesses under GST exemption.
5. Is cloud-based GST software better than offline tools?
Yes, cloud-based software like Zoho Books and HostBooks offer anywhere access; offline tools like TallyPrime are more secure for local use.
